While we are massive fans of Woo Commerce here at Cloud Commerce Pro we are also aware that many customers still prefer channels such as Magento and Shopify.
With todays release of CCP we now offer support for Magento 2.0. Although the majority of Magento sites out there are still using Magento 1.9, we can now support all the same features for Magento 2.0 if you choose to upgrade.
Speak to your project manager if you wish to add a Magento 2.0 channel to your system.